STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000012727Proline-rich transmembrane protein 4. (650 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.891
ENSPLAP00000001003
Ubiquitin-like domain-containing protein.
    
 0.823
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
    
 0.823
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.823
LOC106934764
NEDD8 ubiquitin like modifier.
   
 0.816
LOC106944743
NEDD8 ubiquitin like modifier.
   
 0.816
zfand4
Zinc finger, AN1-type domain 4.
    
 0.737
ENSPLAP00000018625
SUMO peptidase family member, NEDD8 specific.
    
 0.732
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 0.729
LOC106953339
Ubiquitin-like modifier activating enzyme 3.
   
 0.729
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.