STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106957997Synaptic vesicle glycoprotein 2Ba. (696 aa)    
Predicted Functional Partners:
lamc1
Laminin, gamma 1.
     
 0.909
LOC106951719
Laminin, gamma 3.
     
 0.904
lamb1
Laminin, beta 1a.
     
 0.903
ENSPLAP00000006573
Uncharacterized protein.
     
 0.880
lama4
Laminin, alpha 4.
     
 0.877
LOC106955924
Laminin, beta 1b.
     
 0.873
ENSPLAP00000000681
Laminin, alpha 5.
     
 0.855
ENSPLAP00000030043
Uncharacterized protein.
     
 0.852
LOC106943660
Uncharacterized protein.
     
 0.837
LOC106943606
Laminin, beta 2 (laminin S).
     
 0.837
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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