STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps45Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (568 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.998
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.972
LOC106939186
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.963
stx16
Syntaxin 16.
    
 
 0.963
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 
 0.939
stx6
Syntaxin 6.
    
 
 0.932
stx10
Syntaxin 10.
    
 
 0.932
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.911
ergic3
ERGIC and golgi 3.
 
      0.899
mto1
Mitochondrial tRNA translation optimization 1.
 
      0.891
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.