STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpcXeroderma pigmentosum, complementation group C. (898 aa)    
Predicted Functional Partners:
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.988
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.987
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.987
ercc3
Excision repair cross-complementation group 3.
   
 0.984
cetn2
Centrin, EF-hand protein, 2.
    
 0.969
LOC106948217
Centrin 4.
    
 0.969
cetn3
Uncharacterized protein.
    
 0.959
ercc2
Excision repair cross-complementation group 2.
    
 0.959
crppa
CDP-L-ribitol pyrophosphorylase A.
    
 0.952
ddb2
Damage-specific DNA binding protein 2.
   
 0.939
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.