STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106948690Vav 3 guanine nucleotide exchange factor b. (442 aa)    
Predicted Functional Partners:
LOC106951468
Leucine rich repeat containing 4C, genome duplicate b.
    
 0.966
LOC106959947
Netrin g1a.
  
  
 
0.901
pidd1
P53-induced death domain protein 1.
    
 0.855
LOC106959784
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
    
 0.854
LOC106960091
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
    
 0.854
LOC106954053
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.854
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.836
ENSPLAP00000003731
Leucine rich repeat containing 4Ba.
    
 0.821
ENSPLAP00000006120
Vasorin b.
    
 0.821
LOC106958011
Leucine rich repeat containing 4.2.
    
 0.821
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.