LOC106958414 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106958414

Plug_translocon domain-containing protein. (476 aa)

Predicted Functional Partners:

LOC106945789

0.998

sec61b

0.994

sec61g

0.993

rpl11

0.991

rpl23a

0.991

rpl23

0.991

rpl7

0.990

rps11

0.989

rps3

0.989

rps18

0.989

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106945789	LOC106958414	ENSPLAP00000004081	ENSPLAP00000019167	J domain-containing protein.	Plug_translocon domain-containing protein.	0.998
LOC106945789	sec61b	ENSPLAP00000004081	ENSPLAP00000024127	J domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.997
LOC106945789	sec61g	ENSPLAP00000004081	ENSPLAP00000030144	J domain-containing protein.	SEC61 translocon gamma subunit.	0.997
LOC106958414	LOC106945789	ENSPLAP00000019167	ENSPLAP00000004081	Plug_translocon domain-containing protein.	J domain-containing protein.	0.998
LOC106958414	rpl11	ENSPLAP00000019167	ENSPLAP00000002940	Plug_translocon domain-containing protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.991
LOC106958414	rpl23	ENSPLAP00000019167	ENSPLAP00000009748	Plug_translocon domain-containing protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.991
LOC106958414	rpl23a	ENSPLAP00000019167	ENSPLAP00000006234	Plug_translocon domain-containing protein.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.991
LOC106958414	rpl7	ENSPLAP00000019167	ENSPLAP00000006662	Plug_translocon domain-containing protein.	Ribosomal protein L7.	0.990
LOC106958414	rps11	ENSPLAP00000019167	ENSPLAP00000009744	Plug_translocon domain-containing protein.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.989
LOC106958414	rps18	ENSPLAP00000019167	ENSPLAP00000022088	Plug_translocon domain-containing protein.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.989
LOC106958414	rps3	ENSPLAP00000019167	ENSPLAP00000021913	Plug_translocon domain-containing protein.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.989
LOC106958414	sec61b	ENSPLAP00000019167	ENSPLAP00000024127	Plug_translocon domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.994
LOC106958414	sec61g	ENSPLAP00000019167	ENSPLAP00000030144	Plug_translocon domain-containing protein.	SEC61 translocon gamma subunit.	0.993
rpl11	LOC106958414	ENSPLAP00000002940	ENSPLAP00000019167	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Plug_translocon domain-containing protein.	0.991
rpl11	rpl23	ENSPLAP00000002940	ENSPLAP00000009748	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
rpl11	rpl23a	ENSPLAP00000002940	ENSPLAP00000006234	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
rpl11	rpl7	ENSPLAP00000002940	ENSPLAP00000006662	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L7.	0.999
rpl11	rps11	ENSPLAP00000002940	ENSPLAP00000009744	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
rpl11	rps18	ENSPLAP00000002940	ENSPLAP00000022088	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
rpl11	rps3	ENSPLAP00000002940	ENSPLAP00000021913	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999