STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rereArginine-glutamic acid dipeptide (RE) repeats a. (1530 aa)    
Predicted Functional Partners:
LOC106939021
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
  0.760
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
  0.760
LOC106952699
Recombination signal binding protein for immunoglobulin kappa J region a.
    
  0.760
fat1
FAT atypical cadherin 1a.
    
 0.713
fat2
FAT atypical cadherin 2.
    
 0.713
ENSPLAP00000013818
Uncharacterized protein.
    
 0.691
LOC106950590
FAT atypical cadherin 3b.
    
 0.691
ENSPLAP00000028197
Uncharacterized protein.
    
 0.689
ENSPLAP00000030220
Uncharacterized protein.
    
 0.689
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
    
 0.654
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.