STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd2Chromodomain helicase DNA binding protein 2. (1811 aa)    
Predicted Functional Partners:
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 0.827
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.827
fancm
Uncharacterized protein.
   
 0.768
actr5
Actin related protein 5; Belongs to the actin family.
    
 0.757
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.752
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.749
ino80c
INO80 complex subunit C.
    
 0.739
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.738
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.719
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.713
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.