STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106957949RAB33A, member RAS oncogene family. (238 aa)    
Predicted Functional Partners:
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.868
ATG16L2
Autophagy related 16 like 2.
    
 0.868
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.865
trappc6a
Trafficking protein particle complex 6b-like.
   
 0.860
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.860
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.856
rab33b
RAB33B, member RAS oncogene family a.
  
 
 
0.839
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.823
trappc2
Trafficking protein particle complex 2.
    
 0.820
LOC106954728
Trafficking protein particle complex subunit 2.
    
 0.820
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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