STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neblUncharacterized protein. (260 aa)    
Predicted Functional Partners:
ENSPLAP00000017302
Uncharacterized protein.
 
    
 0.813
ENSPLAP00000004368
Uncharacterized protein.
 
      0.776
tmod1
Tropomodulin 1.
   
 0.495
tmod4
Tropomodulin 4 (muscle).
   
 0.495
LOC106962098-2
Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
      
 0.491
tmod3
Tropomodulin 2.
   
 0.482
actn3
Actinin alpha 3b.
   
 0.481
actn1
Actinin, alpha 1.
   
 0.481
ACTN4
Actinin alpha 4.
   
 0.481
LOC106934973
Actinin, alpha 2b.
   
 0.481
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.