STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106937342H6 family homeobox 4. (255 aa)    
Predicted Functional Partners:
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
    
   0.652
hinfp
Histone H4 transcription factor.
    
   0.604
LOC106948172
Zgc:112083.
    
   0.604
dtnb
Dystrobrevin.
   
   0.575
dtna
Dystrobrevin.
   
   0.575
LOC106945226
Dystrobrevin.
   
   0.571
ENSPLAP00000008798
Uncharacterized protein.
    
 
 0.569
tbx1
T-box transcription factor 1.
    
 
 0.569
TBX22
T-box transcription factor 22.
    
 
 0.504
LOC106940940
T-box transcription factor 18.
    
 
 0.504
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.