STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc39Uncharacterized protein. (917 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
   
 
 0.815
LOC106938570
Uncharacterized protein.
   
 
 0.701
ENSPLAP00000018499
Uncharacterized protein.
    
 
 0.696
armc4
Armadillo repeat containing 4.
   
 
 0.686
dnali1
Dynein, axonemal, light intermediate chain 1.
    
 
 0.678
ccno
Uncharacterized protein; Belongs to the cyclin family.
    
 0.677
lrrc6
Leucine rich repeat containing 6.
   
 0.664
RSPH1
Radial spoke head component 1.
    
 
 0.624
LOC106937488
Uncharacterized protein.
    
 0.624
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 0.618
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.