STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106940088Uncharacterized protein. (285 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
   0.829
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.658
mrpl27
Mitochondrial ribosomal protein L27.
   
 
 0.654
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.654
LOC106962059
Mitochondrial ribosomal protein L23.
   
 
 0.653
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.652
mrpl33
Mitochondrial ribosomal protein L33.
   
 
 0.652
mrpl43
Mitochondrial ribosomal protein L43.
   
   0.650
ENSPLAP00000002570
Mitochondrial ribosomal protein S6.
   
   0.638
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.638
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.