STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106950296Uncharacterized protein. (1645 aa)    
Predicted Functional Partners:
LOC106952935
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.994
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.994
LOC106951453
Uncharacterized protein.
   
 0.994
ranbp2
RAN binding protein 2.
  
 0.885
gapvd1
GTPase activating protein and VPS9 domains 1.
   
 0.799
LOC106939465
RAB5C, member RAS oncogene family.
    
 0.761
rab5a
Uncharacterized protein.
    
 0.761
LOC106950324
RAB5B, member RAS oncogene family.
    
 0.761
LOC106950562
Ras-related protein Rab-5B-like.
    
 0.761
LOC106949789
Uncharacterized protein.
    
 0.761
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.