STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec22aSEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family. (303 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 0.964
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.955
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.954
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.953
stx18
Syntaxin 18.
   
 0.930
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.929
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.908
rint1
RAD50 interactor 1.
    
 0.903
LOC106943426
Zw10 kinetochore protein.
    
 0.893
BET1L
Bet1 golgi vesicular membrane trafficking protein like.
    
 0.890
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.