STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106937542Retinal homeobox gene 1. (329 aa)    
Predicted Functional Partners:
LOC106961202
MADS-box domain-containing protein.
    
 0.561
srf
Serum response factor b.
    
 0.561
LOC106954051
Retinal G protein coupled receptor b.
    
 
 0.533
ldb1
LIM-domain binding 1b.
    
 0.523
LOC106947875
LIM domain binding 2a.
    
 0.523
LOC106961067
LIM domain binding 1a.
    
 0.523
ska3
Spindle and kinetochore associated complex subunit 3.
      
 0.516
cby1
Chibby homolog 1 (Drosophila).
      
 0.516
LOC106938482
Achaete-scute family bHLH transcription factor 1a.
   
 0.504
figla
Folliculogenesis specific bHLH transcription factor.
   
 0.487
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.