Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
agtpbp1ATP/GTP binding protein 1. (1235 aa)    
Predicted Functional Partners:
ttll4
Tubulin tyrosine ligase-like family, member 4.
    
 
 0.905
hectd1
HECT domain containing 1.
    
   0.709
naa35
N(alpha)-acetyltransferase 35, NatC auxiliary subunit.
      
 0.654
col8a2
Collagen, type VIII, alpha 2.
      
 0.650
mrps27
Mitochondrial ribosomal protein S27.
     
 0.639
ttll2
Tubulin tyrosine ligase-like family, member 2.
      
 0.629
ubap1
Ubiquitin associated protein 1.
      
 0.602
ttll5
Tubulin tyrosine ligase-like family, member 5.
      
 0.579
ttll11
Tubulin tyrosine ligase-like family, member 11.
      
 0.579
spcs2
Signal peptidase complex subunit 2.
      
 0.574
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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