pura protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106908116	LOC106908165	ENSPMEP00000006104	ENSPMEP00000024180	Uncharacterized protein.	RNA binding motif protein 4.1.	0.418
LOC106908116	pura	ENSPMEP00000006104	ENSPMEP00000001027	Uncharacterized protein.	Purine-rich element binding protein Aa.	0.650
LOC106908116	rfc3	ENSPMEP00000006104	ENSPMEP00000000253	Uncharacterized protein.	Replication factor C (activator 1) 3.	0.790
LOC106908165	LOC106908116	ENSPMEP00000024180	ENSPMEP00000006104	RNA binding motif protein 4.1.	Uncharacterized protein.	0.418
LOC106908165	PURB	ENSPMEP00000024180	ENSPMEP00000005855	RNA binding motif protein 4.1.	Purine rich element binding protein B.	0.418
LOC106908165	hnrnpa3	ENSPMEP00000024180	ENSPMEP00000005058	RNA binding motif protein 4.1.	Heterogeneous nuclear ribonucleoprotein A3.	0.443
LOC106908165	pura	ENSPMEP00000024180	ENSPMEP00000001027	RNA binding motif protein 4.1.	Purine-rich element binding protein Aa.	0.635
LOC106926230	pura	ENSPMEP00000009603	ENSPMEP00000001027	Chemokine (C-C motif) receptor 8.1; Belongs to the G-protein coupled receptor 1 family.	Purine-rich element binding protein Aa.	0.572
PURB	LOC106908165	ENSPMEP00000005855	ENSPMEP00000024180	Purine rich element binding protein B.	RNA binding motif protein 4.1.	0.418
PURB	pura	ENSPMEP00000005855	ENSPMEP00000001027	Purine rich element binding protein B.	Purine-rich element binding protein Aa.	0.650
PURB	rfc3	ENSPMEP00000005855	ENSPMEP00000000253	Purine rich element binding protein B.	Replication factor C (activator 1) 3.	0.790
adarb2	hnrnpa3	ENSPMEP00000000436	ENSPMEP00000005058	Adenosine deaminase RNA specific B2 (inactive).	Heterogeneous nuclear ribonucleoprotein A3.	0.761
adarb2	pura	ENSPMEP00000000436	ENSPMEP00000001027	Adenosine deaminase RNA specific B2 (inactive).	Purine-rich element binding protein Aa.	0.621
cdk5	pura	ENSPMEP00000014717	ENSPMEP00000001027	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Purine-rich element binding protein Aa.	0.589
e2f1	pura	ENSPMEP00000017364	ENSPMEP00000001027	E2F transcription factor 1.	Purine-rich element binding protein Aa.	0.624
hnrnpa3	LOC106908165	ENSPMEP00000005058	ENSPMEP00000024180	Heterogeneous nuclear ribonucleoprotein A3.	RNA binding motif protein 4.1.	0.443
hnrnpa3	adarb2	ENSPMEP00000005058	ENSPMEP00000000436	Heterogeneous nuclear ribonucleoprotein A3.	Adenosine deaminase RNA specific B2 (inactive).	0.761
hnrnpa3	pura	ENSPMEP00000005058	ENSPMEP00000001027	Heterogeneous nuclear ribonucleoprotein A3.	Purine-rich element binding protein Aa.	0.602
pura	LOC106908116	ENSPMEP00000001027	ENSPMEP00000006104	Purine-rich element binding protein Aa.	Uncharacterized protein.	0.650
pura	LOC106908165	ENSPMEP00000001027	ENSPMEP00000024180	Purine-rich element binding protein Aa.	RNA binding motif protein 4.1.	0.635