hamp protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

hamp

Uncharacterized protein. (94 aa)

Predicted Functional Partners:

slc40a1

0.949

LOC106910073

0.926

mrc2

0.571

LOC106914685

0.559

ENSPMEP00000013514

0.497

ENSPMEP00000014481

0.495

LOC106922082

0.465

LOC106922093

0.465

homez

0.457

ENSPMEP00000007601

0.456

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000007601	ENSPMEP00000013514	ENSPMEP00000007601	ENSPMEP00000013514	Si:ch211-215c18.3.	Uncharacterized protein.	0.468
ENSPMEP00000007601	ENSPMEP00000014481	ENSPMEP00000007601	ENSPMEP00000014481	Si:ch211-215c18.3.	Uncharacterized protein.	0.486
ENSPMEP00000007601	hamp	ENSPMEP00000007601	ENSPMEP00000001045	Si:ch211-215c18.3.	Uncharacterized protein.	0.456
ENSPMEP00000007601	homez	ENSPMEP00000007601	ENSPMEP00000027140	Si:ch211-215c18.3.	Homeobox and leucine zipper encoding a.	0.492
ENSPMEP00000013514	ENSPMEP00000007601	ENSPMEP00000013514	ENSPMEP00000007601	Uncharacterized protein.	Si:ch211-215c18.3.	0.468
ENSPMEP00000013514	hamp	ENSPMEP00000013514	ENSPMEP00000001045	Uncharacterized protein.	Uncharacterized protein.	0.497
ENSPMEP00000013514	homez	ENSPMEP00000013514	ENSPMEP00000027140	Uncharacterized protein.	Homeobox and leucine zipper encoding a.	0.407
ENSPMEP00000014481	ENSPMEP00000007601	ENSPMEP00000014481	ENSPMEP00000007601	Uncharacterized protein.	Si:ch211-215c18.3.	0.486
ENSPMEP00000014481	hamp	ENSPMEP00000014481	ENSPMEP00000001045	Uncharacterized protein.	Uncharacterized protein.	0.495
ENSPMEP00000014481	homez	ENSPMEP00000014481	ENSPMEP00000027140	Uncharacterized protein.	Homeobox and leucine zipper encoding a.	0.447
LOC106910073	hamp	ENSPMEP00000015995	ENSPMEP00000001045	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Uncharacterized protein.	0.926
LOC106910073	slc40a1	ENSPMEP00000015995	ENSPMEP00000006640	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.902
LOC106914685	hamp	ENSPMEP00000019868	ENSPMEP00000001045	Liver-expressed antimicrobial peptide 2.	Uncharacterized protein.	0.559
LOC106922082	LOC106922093	ENSPMEP00000001738	ENSPMEP00000022036	Biotinidase.	CN hydrolase domain-containing protein.	0.900
LOC106922082	hamp	ENSPMEP00000001738	ENSPMEP00000001045	Biotinidase.	Uncharacterized protein.	0.465
LOC106922093	LOC106922082	ENSPMEP00000022036	ENSPMEP00000001738	CN hydrolase domain-containing protein.	Biotinidase.	0.900
LOC106922093	hamp	ENSPMEP00000022036	ENSPMEP00000001045	CN hydrolase domain-containing protein.	Uncharacterized protein.	0.465
hamp	ENSPMEP00000007601	ENSPMEP00000001045	ENSPMEP00000007601	Uncharacterized protein.	Si:ch211-215c18.3.	0.456
hamp	ENSPMEP00000013514	ENSPMEP00000001045	ENSPMEP00000013514	Uncharacterized protein.	Uncharacterized protein.	0.497
hamp	ENSPMEP00000014481	ENSPMEP00000001045	ENSPMEP00000014481	Uncharacterized protein.	Uncharacterized protein.	0.495