LOC106932346 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106932346

HTH La-type RNA-binding domain-containing protein. (570 aa)

Predicted Functional Partners:

rack1

0.795

zc3h12b

0.564

usp10

0.563

atxn2

0.551

LOC106924694

0.541

LOC106914451

0.521

hectd1

0.520

ENSPMEP00000015894

0.514

ENSPMEP00000016008

0.514

wdr31

0.514

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000015894	LOC106932346	ENSPMEP00000015894	ENSPMEP00000001079	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.514
ENSPMEP00000016008	LOC106932346	ENSPMEP00000016008	ENSPMEP00000001079	Calponin-homology (CH) domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.514
LOC106914451	LOC106932346	ENSPMEP00000021957	ENSPMEP00000001079	Metadherin a.	HTH La-type RNA-binding domain-containing protein.	0.521
LOC106924694	LOC106932346	ENSPMEP00000014803	ENSPMEP00000001079	LsmAD domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.541
LOC106924694	atxn2	ENSPMEP00000014803	ENSPMEP00000014312	LsmAD domain-containing protein.	Ataxin 2.	0.892
LOC106924694	rack1	ENSPMEP00000014803	ENSPMEP00000032275	LsmAD domain-containing protein.	Receptor for activated C kinase 1.	0.701
LOC106924694	usp10	ENSPMEP00000014803	ENSPMEP00000019117	LsmAD domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.503
LOC106924694	wdr31	ENSPMEP00000014803	ENSPMEP00000019510	LsmAD domain-containing protein.	WD repeat domain 31.	0.561
LOC106932346	ENSPMEP00000015894	ENSPMEP00000001079	ENSPMEP00000015894	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.514
LOC106932346	ENSPMEP00000016008	ENSPMEP00000001079	ENSPMEP00000016008	HTH La-type RNA-binding domain-containing protein.	Calponin-homology (CH) domain-containing protein.	0.514
LOC106932346	LOC106914451	ENSPMEP00000001079	ENSPMEP00000021957	HTH La-type RNA-binding domain-containing protein.	Metadherin a.	0.521
LOC106932346	LOC106924694	ENSPMEP00000001079	ENSPMEP00000014803	HTH La-type RNA-binding domain-containing protein.	LsmAD domain-containing protein.	0.541
LOC106932346	atxn2	ENSPMEP00000001079	ENSPMEP00000014312	HTH La-type RNA-binding domain-containing protein.	Ataxin 2.	0.551
LOC106932346	hectd1	ENSPMEP00000001079	ENSPMEP00000032429	HTH La-type RNA-binding domain-containing protein.	HECT domain containing 1.	0.520
LOC106932346	rack1	ENSPMEP00000001079	ENSPMEP00000032275	HTH La-type RNA-binding domain-containing protein.	Receptor for activated C kinase 1.	0.795
LOC106932346	usp10	ENSPMEP00000001079	ENSPMEP00000019117	HTH La-type RNA-binding domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.563
LOC106932346	wdr31	ENSPMEP00000001079	ENSPMEP00000019510	HTH La-type RNA-binding domain-containing protein.	WD repeat domain 31.	0.514
LOC106932346	zc3h12b	ENSPMEP00000001079	ENSPMEP00000001608	HTH La-type RNA-binding domain-containing protein.	Zinc finger CCCH-type containing 12B.	0.564
atxn2	LOC106924694	ENSPMEP00000014312	ENSPMEP00000014803	Ataxin 2.	LsmAD domain-containing protein.	0.892
atxn2	LOC106932346	ENSPMEP00000014312	ENSPMEP00000001079	Ataxin 2.	HTH La-type RNA-binding domain-containing protein.	0.551