LOC106933033 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106933033

General transcription factor IIA, 1-like. (430 aa)

Predicted Functional Partners:

gtf2a2

0.988

gtf2b

0.965

tbpl1

0.963

gtf2e2

0.957

LOC106922172

0.944

taf11

0.941

ENSPMEP00000028079

0.938

ENSPMEP00000006493

0.928

tbp

0.928

ENSPMEP00000013567

0.928

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000006493	ENSPMEP00000013567	ENSPMEP00000006493	ENSPMEP00000013567	Uncharacterized protein.	Uncharacterized protein.	0.905
ENSPMEP00000006493	ENSPMEP00000028079	ENSPMEP00000006493	ENSPMEP00000028079	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.967
ENSPMEP00000006493	LOC106922172	ENSPMEP00000006493	ENSPMEP00000000513	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.967
ENSPMEP00000006493	LOC106933033	ENSPMEP00000006493	ENSPMEP00000001092	Uncharacterized protein.	General transcription factor IIA, 1-like.	0.928
ENSPMEP00000006493	gtf2a2	ENSPMEP00000006493	ENSPMEP00000003222	Uncharacterized protein.	General transcription factor IIA, 2.	0.958
ENSPMEP00000006493	gtf2b	ENSPMEP00000006493	ENSPMEP00000016834	Uncharacterized protein.	General transcription factor IIB.	0.973
ENSPMEP00000006493	gtf2e2	ENSPMEP00000006493	ENSPMEP00000010476	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.918
ENSPMEP00000006493	taf11	ENSPMEP00000006493	ENSPMEP00000019124	Uncharacterized protein.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.961
ENSPMEP00000006493	tbp	ENSPMEP00000006493	ENSPMEP00000010163	Uncharacterized protein.	TATA box binding protein.	0.901
ENSPMEP00000013567	ENSPMEP00000006493	ENSPMEP00000013567	ENSPMEP00000006493	Uncharacterized protein.	Uncharacterized protein.	0.905
ENSPMEP00000013567	ENSPMEP00000028079	ENSPMEP00000013567	ENSPMEP00000028079	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.967
ENSPMEP00000013567	LOC106922172	ENSPMEP00000013567	ENSPMEP00000000513	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.967
ENSPMEP00000013567	LOC106933033	ENSPMEP00000013567	ENSPMEP00000001092	Uncharacterized protein.	General transcription factor IIA, 1-like.	0.928
ENSPMEP00000013567	gtf2a2	ENSPMEP00000013567	ENSPMEP00000003222	Uncharacterized protein.	General transcription factor IIA, 2.	0.958
ENSPMEP00000013567	gtf2b	ENSPMEP00000013567	ENSPMEP00000016834	Uncharacterized protein.	General transcription factor IIB.	0.973
ENSPMEP00000013567	gtf2e2	ENSPMEP00000013567	ENSPMEP00000010476	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.918
ENSPMEP00000013567	taf11	ENSPMEP00000013567	ENSPMEP00000019124	Uncharacterized protein.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.961
ENSPMEP00000013567	tbp	ENSPMEP00000013567	ENSPMEP00000010163	Uncharacterized protein.	TATA box binding protein.	0.907
ENSPMEP00000028079	ENSPMEP00000006493	ENSPMEP00000028079	ENSPMEP00000006493	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.967
ENSPMEP00000028079	ENSPMEP00000013567	ENSPMEP00000028079	ENSPMEP00000013567	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.967