Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106933729Transmembrane anterior posterior transformation 1a. (592 aa)    
Predicted Functional Partners:
ENSPMEP00000001579
Uncharacterized protein.
    
 
 0.779
LOC106919038
SUN domain-containing protein.
    
 
 0.779
rps16
Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
    
   0.588
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
      
 0.545
haus3
HAUS augmin-like complex, subunit 3.
      
 0.543
ric3
RIC3 domain-containing protein.
    
   0.538
top3b
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
   
  
 0.527
tbccd1
TBCC domain containing 1.
      
 0.497
lap3
Leucine aminopeptidase 3.
      
 0.490
LOC106906400
Uncharacterized protein.
      
 0.476
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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