Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106922111Nipped-B protein. (2333 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.985
mau2
MAU2 sister chromatid cohesion factor.
    
 0.983
pds5b
PDS5 cohesin associated factor B.
   
 0.959
pds5a
PDS5 cohesin associated factor A.
   
 0.959
smc1a
Structural maintenance of chromosomes protein.
   
 0.944
LOC106920733
Structural maintenance of chromosomes protein.
   
 0.944
nipbl
Nipped-B protein.
  
  
 
0.902
ddx11
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.
   
 
 0.886
LOC106911565
PHD finger protein 3.
   
 
 0.882
LOC106905142
Stromal antigen 2b.
   
 0.862
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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