Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcc3ATP-binding cassette, sub-family C (CFTR/MRP), member 3. (1475 aa)    
Predicted Functional Partners:
LOC106920040
Si:ch211-221f10.2.
     
0.925
abcc5
ATP-binding cassette, sub-family C (CFTR/MRP), member 5.
     
0.925
acox3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 
 0.671
LOC106932807
ATP-binding cassette, sub-family G (WHITE), member 2a.
   
 0.661
LOC106928643
ATP-binding cassette, sub-family G (WHITE), member 2d.
   
 0.661
LOC106905498
ATP-binding cassette, sub-family G (WHITE), member 2c.
   
 0.661
gopc
Golgi-associated PDZ and coiled-coil motif containing.
    
 0.636
katnal2
Katanin p60 subunit A-like 2.
   
 0.629
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.621
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
  0.608
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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