Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cbx4Chromobox 4. (641 aa)    
Predicted Functional Partners:
LOC106928182
Chromobox homolog 8b.
    
0.985
LOC106904421
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
0.985
RING1
Ring finger protein 1.
    
 0.975
rnf2
Ring finger protein 2.
    
 0.975
pcgf2
Polycomb group ring finger 2.
    
 0.971
ENSPMEP00000024337
Bmi1 polycomb ring finger oncogene 1a.
    
 0.971
LOC106924748
Chromo domain-containing protein.
  
 
0.971
LOC106914323
Chromobox homolog 2 (Drosophila Pc class).
    
0.969
cbx6
Chromobox homolog 6a.
    
0.966
LOC106918247
Polyhomeotic homolog 2b (Drosophila).
    
 0.914
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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