STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000001165Uncharacterized protein. (554 aa)    
Predicted Functional Partners:
ENSPMEP00000023321
Uncharacterized protein.
 
 
0.989
ENSPMEP00000003677
Uncharacterized protein.
   
 0.896
ENSPMEP00000001181
PH domain-containing protein.
 
     0.778
copb1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.637
itsn2
Intersectin 2a.
     
 0.627
ENSPMEP00000009475
Uncharacterized protein.
     
 0.627
ENSPMEP00000009513
SH3 domain-containing protein.
     
 0.627
ENSPMEP00000009540
Uncharacterized protein.
     
 0.627
ENSPMEP00000027183
Uncharacterized protein.
     
 0.627
LOC106917445
PH domain-containing protein.
 
      0.617
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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