Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fgd4FYVE, RhoGEF and PH domain containing 4. (691 aa)    
Predicted Functional Partners:
sh3tc2
SH3 domain and tetratricopeptide repeats 2.
      
 0.656
LOC106933042
Cell division cycle 42.
    
 0.647
CDC42
Cell division cycle 42.
    
 0.647
itsn2
Intersectin 2a.
     
 0.535
ENSPMEP00000009475
Uncharacterized protein.
     
 0.535
ENSPMEP00000009513
SH3 domain-containing protein.
     
 0.535
ENSPMEP00000009540
Uncharacterized protein.
     
 0.535
ENSPMEP00000027183
Uncharacterized protein.
     
 0.535
mtmr2
Myotubularin related protein 2.
      
 0.519
LOC106919891
Uncharacterized protein.
    
 0.489
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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