Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC106933018Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (254 aa)    
Predicted Functional Partners:
LOC106922867
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
 0.916
LOC106907087
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
 0.840
hadhb
Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family.
    
   0.785
LOC106926452
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.782
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.782
gpc2
Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.714
ENSPMEP00000006311
Glypican 5b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.714
LOC106930130
Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.714
LOC106932074
Glypican 6a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.714
gpc3
Glypican 3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.714
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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