STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106933018Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (254 aa)    
Predicted Functional Partners:
LOC106922867
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
0.951
LOC106907087
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.943
ENSPMEP00000005603
Fibronectin type-III domain-containing protein.
     
 0.899
LOC106933972
Tenascin C.
     
 0.779
LOC106926452
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.766
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.766
ENSPMEP00000011380
Uncharacterized protein.
     
 0.761
tnr
Tenascin R (restrictin, janusin).
     
 0.761
ENSPMEP00000024604
Fibronectin type-III domain-containing protein.
     
 0.761
LOC106917049
Zmp:0000000846.
     
 0.761
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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