STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ngly1N-glycanase 1. (633 aa)    
Predicted Functional Partners:
katnal2
Katanin p60 subunit A-like 2.
    
 0.998
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
    
 0.995
ubxn1
UBX domain protein 1.
    
 0.994
LOC106904547
RAD23 homolog B, nucleotide excision repair protein.
    
 0.979
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
    
 0.979
LOC106922052
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.901
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.901
SPATA5
Spermatogenesis associated 5; Belongs to the AAA ATPase family.
    
 0.878
spata5l1
Spermatogenesis associated 5-like 1.
    
 0.878
LOC106923389
Ubiquitin-like domain-containing protein.
    
 0.866
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.