Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD50Ankyrin repeat domain 50. (1137 aa)    
Predicted Functional Partners:
ENSPMEP00000021746
Uncharacterized protein.
 
     0.925
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.735
LOC106927057
Serine/threonine-protein phosphatase.
   
 0.731
PPP6C
Serine/threonine-protein phosphatase.
   
 0.731
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.629
arl9
ADP-ribosylation factor-like 9.
   
 0.621
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.618
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.618
LOC106924870
Protein phosphatase 6, regulatory subunit 2b.
    
 0.618
SPATA5
Spermatogenesis associated 5; Belongs to the AAA ATPase family.
   
 0.574
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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