Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc19LRRCT domain-containing protein. (352 aa)    
Predicted Functional Partners:
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.820
kbtbd8
Kelch repeat and BTB (POZ) domain containing 8.
     
 0.782
tmem214
Transmembrane protein 214.
      
 0.769
trmt11
tRNA methyltransferase 11 homolog.
      
 0.749
LOC106927677
Kelch repeat and BTB (POZ) domain containing 7.
     
 0.711
immp2l
Mitochondrial inner membrane protease subunit.
      
 0.673
dhx30
DEAH (Asp-Glu-Ala-His) box helicase 30.
    
 0.537
wdr90
WD repeat domain 90.
    
  0.487
LOC106928735
Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 1.
    
 
 0.467
LOC106928733
Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 2.
    
 
 0.467
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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