Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
cherpCalcium homeostasis endoplasmic reticulum protein. (788 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 0.999
DHX15
DEAH-box helicase 15.
   
 0.998
u2surp
U2 snRNP-associated SURP domain containing.
   
 0.996
LOC106916664
Zgc:163098.
   
 0.996
sf3a2
Splicing factor 3a, subunit 2.
   
 0.996
phf5a
PHD finger protein 5A.
   
 0.993
ENSPMEP00000032120
Splicing factor 3a, subunit 1.
   
 0.978
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.976
lix1l
Splicing factor 3b, subunit 4.
   
 0.975
smndc1
Survival motor neuron domain containing 1.
   
  0.969
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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