Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921014DEP domain-containing protein. (385 aa)    
Predicted Functional Partners:
LOC106916117
Uncharacterized protein.
    
 
 0.648
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.648
LOC106922215
Uncharacterized protein.
 
      0.586
mras
Muscle RAS oncogene homolog.
    
 0.581
LOC106916736
RAP1A, member of RAS oncogene family a.
    
 0.506
LOC106903419
Uncharacterized protein.
    
 0.506
rap1b
Uncharacterized protein.
    
 0.506
rapgefl1
Rap guanine nucleotide exchange factor (GEF)-like 1.
    
 
 0.492
LOC106929676
Uncharacterized protein.
  
     0.479
slc35c1
Solute carrier family 35 member C1.
      
 0.472
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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