Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dmrt3Doublesex and mab-3 related transcription factor 3a. (467 aa)    
Predicted Functional Partners:
wdr24
WD repeat domain 24.
    
 0.763
kptn
Kaptin (actin binding protein).
    
 0.757
depdc5
DEP domain containing 5.
   
 0.730
ENSPMEP00000030830
WD repeat domain 59.
    
 0.728
nprl2
NPR2 like, GATOR1 complex subunit.
    
 0.719
dmrt2
Doublesex and mab-3 related transcription factor 2a.
   
  
 0.686
tdrd1
Tudor domain containing 1.
      
 0.672
LOC106911765
Protein prenyltransferase alpha subunit repeat containing 1.
      
 0.668
nprl3
NPR3-like, GATOR1 complex subunit.
    
 0.627
lrrc40
Leucine rich repeat containing 40.
      
 0.614
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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