Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000001340Tetraspanin. (263 aa)    
Predicted Functional Partners:
atp5po
ATP synthase peripheral stalk subunit OSCP.
    
   0.530
pick1
Protein interacting with prkca 1.
    
 0.517
ENSPMEP00000012754
Uncharacterized protein.
   
 
 0.510
sash3
SAM and SH3 domain containing 3.
   
  
 0.501
cytip
Cytohesin 1 interacting protein.
   
  0.483
LOC106915773
Presequence translocase associated motor 16.
    
   0.470
tyrobp
Uncharacterized protein.
   
  
 0.468
tspan31
Tetraspanin 31; Belongs to the tetraspanin (TM4SF) family.
   
  
 0.452
LOC106919841
Uncharacterized protein.
     
 0.446
lamp2
Lysosomal-associated membrane protein 2.
   
 0.446
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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