Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921008Troponin I type 1b (skeletal, slow). (216 aa)    
Predicted Functional Partners:
LOC106905121
Si:rp71-17i16.4.
   
 0.975
TNNC1
Troponin C1, slow skeletal and cardiac type.
   
 0.966
LOC106906803
Uncharacterized protein.
   
 0.966
LOC106925032
Troponin C type 1b (slow).
   
 0.966
ENSPMEP00000033374
Troponin T2d, cardiac.
  
 0.950
LOC106929192
Uncharacterized protein.
  
 0.948
tnnt2
Troponin T type 2a (cardiac).
  
 0.947
ENSPMEP00000023483
Uncharacterized protein.
  
 0.947
ENSPMEP00000001358
Troponin T type 2b (cardiac).
  
 0.945
ENSPMEP00000001990
Uncharacterized protein.
  
 0.945
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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