Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ube2fUbiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family. (200 aa)    
Predicted Functional Partners:
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.976
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.968
rnf7
Ring finger protein 7.
   
 0.966
nae1
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
    
 0.962
LOC106918831
Ubiquitin-like domain-containing protein.
   
 0.960
LOC106903829
NEDD8 ubiquitin like modifier.
   
 0.960
LOC106903451
Ubiquitin-like modifier activating enzyme 3.
    
 0.959
UBA3
Ubiquitin like modifier activating enzyme 3.
    
 0.959
dcun1d3
DCN1-like protein.
    
 0.947
dcun1d1
DCN1-like protein.
    
 0.928
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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