Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000001378Uncharacterized protein. (188 aa)    
Predicted Functional Partners:
LOC106934329
Unc-5 netrin receptor Db.
 
     0.882
LOC106905329
Netrin 4.
    
 0.852
LOC106923221
Si:dkey-202e22.2.
    
 0.852
LOC106903301
Uncharacterized protein.
    
 0.852
NEO1
Neogenin 1.
    
 0.783
dcc
DCC netrin 1 receptor.
    
 0.783
ENSPMEP00000030311
Ig-like domain-containing protein.
    
 0.783
LOC106924807
Netrin 5.
    
 0.775
LOC106926015
Netrin 2.
    
 0.775
NTN1
Netrin 1.
    
 0.775
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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