STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921005Plakophilin 1b. (732 aa)    
Predicted Functional Partners:
LOC106918918
Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.823
LOC106931515
Junction plakoglobin a.
   
 0.797
LOC106909341
Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.786
LOC106918917
Uncharacterized protein.
   
 0.786
dsp
Desmoplakin a.
   
 0.766
mst1r
Macrophage stimulating 1 receptor b.
   
 0.709
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.709
LOC106916334
Macrophage stimulating 1 receptor a.
   
 0.709
perp
P53 apoptosis effector related to pmp22.
   
 
 0.689
LOC106921026
Uncharacterized protein.
    
 0.633
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.