Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rabl3RAB, member of RAS oncogene family-like 3. (233 aa)    
Predicted Functional Partners:
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 
 0.864
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
  
 0.805
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
   
 
 0.790
ENSPMEP00000015565
NDK domain-containing protein.
  
 0.785
LOC106911164
Uncharacterized protein.
    
 
 0.766
LOC106927395
Golgi pH regulator.
    
 
 0.766
rab24
RAB24, member RAS oncogene family.
      
 0.738
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 
 0.704
LOC106917741
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 
 0.704
rab3gap1
RAB3 GTPase activating protein subunit 1.
      
 0.698
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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