LOC106915251 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000030787	LOC106903438	ENSPMEP00000030787	ENSPMEP00000032803	GPS2_interact domain-containing protein.	Retinoid x receptor, beta b.	0.844
ENSPMEP00000030787	LOC106915251	ENSPMEP00000030787	ENSPMEP00000001388	GPS2_interact domain-containing protein.	Uncharacterized protein.	0.734
ENSPMEP00000030787	LOC106916811	ENSPMEP00000030787	ENSPMEP00000027894	GPS2_interact domain-containing protein.	Uncharacterized protein.	0.844
ENSPMEP00000030787	LOC106919386	ENSPMEP00000030787	ENSPMEP00000013975	GPS2_interact domain-containing protein.	Nuclear receptor corepressor 1.	0.936
ENSPMEP00000030787	LOC106928697	ENSPMEP00000030787	ENSPMEP00000027852	GPS2_interact domain-containing protein.	Retinoid X receptor, alpha a.	0.844
ENSPMEP00000030787	RXRB	ENSPMEP00000030787	ENSPMEP00000027806	GPS2_interact domain-containing protein.	Uncharacterized protein.	0.844
ENSPMEP00000030787	med1	ENSPMEP00000030787	ENSPMEP00000025468	GPS2_interact domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.668
ENSPMEP00000030787	ncoa6	ENSPMEP00000030787	ENSPMEP00000005834	GPS2_interact domain-containing protein.	Nuclear receptor coactivator 6.	0.825
ENSPMEP00000030787	nrip1	ENSPMEP00000030787	ENSPMEP00000034632	GPS2_interact domain-containing protein.	Nuclear receptor interacting protein 1b.	0.430
LOC106903438	ENSPMEP00000030787	ENSPMEP00000032803	ENSPMEP00000030787	Retinoid x receptor, beta b.	GPS2_interact domain-containing protein.	0.844
LOC106903438	LOC106915251	ENSPMEP00000032803	ENSPMEP00000001388	Retinoid x receptor, beta b.	Uncharacterized protein.	0.743
LOC106903438	LOC106919386	ENSPMEP00000032803	ENSPMEP00000013975	Retinoid x receptor, beta b.	Nuclear receptor corepressor 1.	0.844
LOC106903438	LOC106928697	ENSPMEP00000032803	ENSPMEP00000027852	Retinoid x receptor, beta b.	Retinoid X receptor, alpha a.	0.915
LOC106903438	med1	ENSPMEP00000032803	ENSPMEP00000025468	Retinoid x receptor, beta b.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.906
LOC106903438	ncoa6	ENSPMEP00000032803	ENSPMEP00000005834	Retinoid x receptor, beta b.	Nuclear receptor coactivator 6.	0.875
LOC106903438	ncor2	ENSPMEP00000032803	ENSPMEP00000016645	Retinoid x receptor, beta b.	Nuclear receptor corepressor 2.	0.844
LOC106903438	nrip1	ENSPMEP00000032803	ENSPMEP00000034632	Retinoid x receptor, beta b.	Nuclear receptor interacting protein 1b.	0.637
LOC106915251	ENSPMEP00000030787	ENSPMEP00000001388	ENSPMEP00000030787	Uncharacterized protein.	GPS2_interact domain-containing protein.	0.734
LOC106915251	LOC106903438	ENSPMEP00000001388	ENSPMEP00000032803	Uncharacterized protein.	Retinoid x receptor, beta b.	0.743
LOC106915251	LOC106916811	ENSPMEP00000001388	ENSPMEP00000027894	Uncharacterized protein.	Uncharacterized protein.	0.803