STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtf2ird1GTF2I repeat domain containing 1. (1001 aa)    
Predicted Functional Partners:
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
      
 0.533
nsun5
NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.525
rfc2
Replication factor C (activator 1) 2.
      
 0.519
bcl7b
BAF chromatin remodeling complex subunit BCL7B b.
      
 0.517
wdr53
WD repeat domain 53.
      
 0.512
ENSPMEP00000025949
One cut domain family member.
      
 0.512
ppp5c
Serine/threonine-protein phosphatase.
      
 0.512
ENSPMEP00000027048
RING-type domain-containing protein.
      
 0.507
WDR7
WD repeat domain 7.
      
 0.507
ENSPMEP00000007594
DnaJ heat shock protein family (Hsp40) member C30.
      
 0.501
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.