Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106904585Uncharacterized protein. (471 aa)    
Predicted Functional Partners:
LOC106916113
Uncharacterized protein.
    
 0.920
ENSPMEP00000034845
Uncharacterized protein.
    
 0.800
LOC106930126
Uncharacterized protein.
      
 0.691
fancm
Uncharacterized protein.
    
 0.688
LOC106904587
Uncharacterized protein.
    
 0.671
LOC106916641
Fibronectin type-III domain-containing protein.
     
 0.650
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.629
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.623
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.616
rsad2
Radical S-adenosyl methionine domain containing 2.
      
 0.614
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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