Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106933010Uncharacterized protein. (490 aa)    
Predicted Functional Partners:
ddx11
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.
    
 
 0.806
mad1l1
Mitotic arrest deficient 1 like 1.
    
 
 0.801
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
    
   0.798
smc3
Structural maintenance of chromosomes protein.
    
   0.743
smc1a
Structural maintenance of chromosomes protein.
    
   0.655
LOC106920733
Structural maintenance of chromosomes protein.
    
   0.655
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.623
ncln
Nicalin.
   
  
 0.608
pfdn6
Prefoldin subunit 6.
    
   0.572
hoxa5
Homeobox A5a.
      
 0.557
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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