STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106915248Homeobox C12a. (278 aa)    
Predicted Functional Partners:
LOC106931353
Musculoskeletal, embryonic nuclear protein 1b.
    
 
 0.577
LOC106929508
Urotensin 2, alpha.
      
 0.575
ppard
Peroxisome proliferator-activated receptor delta b.
    
 
 0.529
LOC106904719
Uncharacterized protein.
    
 
 0.511
ENSPMEP00000021181
Musculoskeletal, embryonic nuclear protein 1a.
    
 
 0.511
mgrn1
Mahogunin, ring finger 1b.
      
 0.499
pbx1
Homeobox domain-containing protein.
    
 
 0.469
LOC106908296
Pre-B-cell leukemia homeobox 2.
    
 
 0.469
pbx4
Pre-B-cell leukemia transcription factor 4.
    
 
 0.469
pbx3
Pre-B-cell leukemia homeobox 3b.
    
 
 0.469
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.