Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106927736Zgc:103508. (205 aa)    
Predicted Functional Partners:
LOC106910419
Uncharacterized protein.
    
 0.909
LOC106933450
Bromodomain PHD finger transcription factor.
    
 0.909
BPTF
Bromodomain PHD finger transcription factor.
    
 0.909
hmgxb4
HMG box domain containing 4a.
    
 
 0.904
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.892
ENSPMEP00000023180
CAF1C_H4-bd domain-containing protein.
    
   0.697
LOC106913905
Retinoblastoma binding protein 4.
    
   0.697
nkrf
NFKB repressing factor.
      
 0.640
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
     
 0.598
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
     
 0.582
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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