LOC106907477 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000030828	LOC106907477	ENSPMEP00000030828	ENSPMEP00000001443	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.703
ENSPMEP00000030828	LOC106923389	ENSPMEP00000030828	ENSPMEP00000014676	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.991
ENSPMEP00000030828	LOC106924782	ENSPMEP00000030828	ENSPMEP00000012910	Ubiquitin-like domain-containing protein.	Mothers against decapentaplegic homolog.	0.437
ENSPMEP00000030828	rps27a	ENSPMEP00000030828	ENSPMEP00000029582	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.998
ENSPMEP00000030828	smad7	ENSPMEP00000030828	ENSPMEP00000017295	Ubiquitin-like domain-containing protein.	Mothers against decapentaplegic homolog.	0.437
LOC106906439	LOC106907477	ENSPMEP00000012884	ENSPMEP00000001443	Angiomotin.	Uncharacterized protein.	0.748
LOC106907477	ENSPMEP00000030828	ENSPMEP00000001443	ENSPMEP00000030828	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.703
LOC106907477	LOC106906439	ENSPMEP00000001443	ENSPMEP00000012884	Uncharacterized protein.	Angiomotin.	0.748
LOC106907477	LOC106923389	ENSPMEP00000001443	ENSPMEP00000014676	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.788
LOC106907477	LOC106924782	ENSPMEP00000001443	ENSPMEP00000012910	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.699
LOC106907477	gja1	ENSPMEP00000001443	ENSPMEP00000028626	Uncharacterized protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.786
LOC106907477	ptch1	ENSPMEP00000001443	ENSPMEP00000034560	Uncharacterized protein.	Patched 1.	0.710
LOC106907477	ptch2	ENSPMEP00000001443	ENSPMEP00000006474	Uncharacterized protein.	Patched 2.	0.710
LOC106907477	rps27a	ENSPMEP00000001443	ENSPMEP00000029582	Uncharacterized protein.	Ribosomal protein S27a.	0.782
LOC106907477	smad7	ENSPMEP00000001443	ENSPMEP00000017295	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.699
LOC106907477	uba52	ENSPMEP00000001443	ENSPMEP00000013815	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.703
LOC106923389	ENSPMEP00000030828	ENSPMEP00000014676	ENSPMEP00000030828	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.991
LOC106923389	LOC106907477	ENSPMEP00000014676	ENSPMEP00000001443	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.788
LOC106923389	LOC106924782	ENSPMEP00000014676	ENSPMEP00000012910	Ubiquitin-like domain-containing protein.	Mothers against decapentaplegic homolog.	0.538
LOC106923389	gja1	ENSPMEP00000014676	ENSPMEP00000028626	Ubiquitin-like domain-containing protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.897