tpcn2 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

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[Homology]

Score

tpcn2

Uncharacterized protein. (659 aa)

Predicted Functional Partners:

tpcn1

0.935

ENSPMEP00000016872

0.922

LOC106912857

0.902

LOC106912836

0.902

LOC106912868

0.901

SLC24A5

0.739

IFT122

0.724

slc38a7

0.708

LOC106925500

0.699

ift140

0.696

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000016872	tpcn1	ENSPMEP00000016872	ENSPMEP00000011456	Uncharacterized protein.	Two pore segment channel 1.	0.922
ENSPMEP00000016872	tpcn2	ENSPMEP00000016872	ENSPMEP00000001455	Uncharacterized protein.	Uncharacterized protein.	0.922
IFT122	ift140	ENSPMEP00000011678	ENSPMEP00000014848	Intraflagellar transport 122.	Intraflagellar transport 140 homolog (Chlamydomonas).	0.999
IFT122	tpcn1	ENSPMEP00000011678	ENSPMEP00000011456	Intraflagellar transport 122.	Two pore segment channel 1.	0.724
IFT122	tpcn2	ENSPMEP00000011678	ENSPMEP00000001455	Intraflagellar transport 122.	Uncharacterized protein.	0.724
LOC106912836	LOC106912857	ENSPMEP00000007212	ENSPMEP00000007192	Uncharacterized protein.	Uncharacterized protein.	0.909
LOC106912836	LOC106912868	ENSPMEP00000007212	ENSPMEP00000007176	Uncharacterized protein.	Uncharacterized protein.	0.908
LOC106912836	tpcn1	ENSPMEP00000007212	ENSPMEP00000011456	Uncharacterized protein.	Two pore segment channel 1.	0.900
LOC106912836	tpcn2	ENSPMEP00000007212	ENSPMEP00000001455	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC106912857	LOC106912836	ENSPMEP00000007192	ENSPMEP00000007212	Uncharacterized protein.	Uncharacterized protein.	0.909
LOC106912857	LOC106912868	ENSPMEP00000007192	ENSPMEP00000007176	Uncharacterized protein.	Uncharacterized protein.	0.906
LOC106912857	tpcn1	ENSPMEP00000007192	ENSPMEP00000011456	Uncharacterized protein.	Two pore segment channel 1.	0.900
LOC106912857	tpcn2	ENSPMEP00000007192	ENSPMEP00000001455	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC106912868	LOC106912836	ENSPMEP00000007176	ENSPMEP00000007212	Uncharacterized protein.	Uncharacterized protein.	0.908
LOC106912868	LOC106912857	ENSPMEP00000007176	ENSPMEP00000007192	Uncharacterized protein.	Uncharacterized protein.	0.906
LOC106912868	tpcn1	ENSPMEP00000007176	ENSPMEP00000011456	Uncharacterized protein.	Two pore segment channel 1.	0.900
LOC106912868	tpcn2	ENSPMEP00000007176	ENSPMEP00000001455	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC106925500	tpcn2	ENSPMEP00000011433	ENSPMEP00000001455	Metalloendopeptidase.	Uncharacterized protein.	0.699
SLC24A5	tpcn2	ENSPMEP00000012749	ENSPMEP00000001455	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Uncharacterized protein.	0.739
ift140	IFT122	ENSPMEP00000014848	ENSPMEP00000011678	Intraflagellar transport 140 homolog (Chlamydomonas).	Intraflagellar transport 122.	0.999