STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921186Uncharacterized protein. (246 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.982
srsf10
Serine and arginine rich splicing factor 10.
   
 0.972
srsf2
Serine and arginine rich splicing factor 2a.
  
0.956
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
 0.951
LOC106917394
SRSF protein kinase 1b.
    
 0.949
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.946
LOC106930372
Serine and arginine rich splicing factor 7a.
   
0.937
srsf7
CCHC-type domain-containing protein.
   
 0.937
magoh
Mago homolog, exon junction complex subunit.
   
 0.934
SRSF3
Serine and arginine rich splicing factor 3b.
   
0.916
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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