Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921186Uncharacterized protein. (246 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.989
LOC106930372
Serine and arginine rich splicing factor 7a.
   
 0.983
srsf7
CCHC-type domain-containing protein.
   
 0.983
alyref
Aly/REF export factor.
   
 0.983
srsf10
Serine and arginine rich splicing factor 10.
   
 0.978
LOC106904784
Serine and arginine rich splicing factor 9.
   
  0.973
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.972
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.970
LOC106927112
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.970
srsf2
Serine and arginine rich splicing factor 2a.
   
 0.969
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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