Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC106929659EBF transcription factor 2. (573 aa)    
Predicted Functional Partners:
eef1g
Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.
    
   0.712
scd
Stearoyl-CoA desaturase b; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.625
LOC106910279
Stearoyl-CoA desaturase; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.625
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.616
yod1
YOD1 deubiquitinase.
    
   0.584
plaa
Phospholipase A2-activating protein.
    
   0.584
lhx9
LIM homeobox 9.
   
 
 0.575
lhx2
LIM homeobox 2b.
   
 
 0.575
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
     
 0.539
faap100
Si:dkey-57h18.1.
    
 
 0.522
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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